JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LSM14B_chr20_62117475_62140374	1/1	c0001	1158	324	85	70	123	8	36	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0002	1158	7	1	6	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0003	1158	3	0	0	3	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0004	1158	2	2	0	0	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0005	1158	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0006	1158	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0007	1158	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM14B_chr20_62117475_62140374	0/0	c0008	1158	1	0	0	1	0	0	copy fasta	LSM14B	chr20	62117475	62140374
LSM1_chr8_38158339_38181493	1/1	c0001	402	401	89	72	184	16	38	copy fasta	LSM1	chr8	38158339	38181493
LSM1_chr8_38158339_38181493	0/0	c0002	402	1	1	0	0	0	0	copy fasta	LSM1	chr8	38158339	38181493
LSM2_chr6_31792396_31811966	0/1	c0001	288	427	96	86	186	18	40	copy fasta	LSM2	chr6	31792396	31811966
LSM3_chr3_14173817_14206122	1/1	c0001	309	384	85	71	168	16	42	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	c0002	309	11	10	1	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM3_chr3_14173817_14206122	0/0	c0003	309	1	1	0	0	0	0	copy fasta	LSM3	chr3	14173817	14206122
LSM4_chr19_18301236_18328076	1/1	c0001	420	392	94	66	168	16	46	copy fasta	LSM4	chr19	18301236	18328076
LSM4_chr19_18301236_18328076	0/0	c0002	420	2	2	0	0	0	0	copy fasta	LSM4	chr19	18301236	18328076
LSM5_chr7_32480338_32495380	0/1	c0001	276	353	65	58	179	13	37	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	1/0	c0002	276	87	32	16	22	3	13	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	c0003	276	2	0	0	2	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	c0004	276	1	1	0	0	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM5_chr7_32480338_32495380	0/0	c0005	276	1	0	0	1	0	0	copy fasta	LSM5	chr7	32480338	32495380
LSM6_chr4_146170718_146196535	1/1	c0001	243	373	78	66	170	17	40	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	c0002	243	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	c0003	243	1	0	0	0	1	0	copy fasta	LSM6	chr4	146170718	146196535
LSM6_chr4_146170718_146196535	0/0	c0004	243	1	1	0	0	0	0	copy fasta	LSM6	chr4	146170718	146196535
LSM7_chr19_2316521_2333586	1/1	c0001	312	434	98	78	195	14	47	copy fasta	LSM7	chr19	2316521	2333586
LSM7_chr19_2316521_2333586	0/0	c0002	312	1	0	0	1	0	0	copy fasta	LSM7	chr19	2316521	2333586
LSM7_chr19_2316521_2333586	0/0	c0003	306	1	0	0	0	0	1	copy fasta	LSM7	chr19	2316521	2333586
LSM8_chr7_118179164_118209035	1/1	c0001	291	406	80	68	200	12	44	copy fasta	LSM8	chr7	118179164	118209035
LSM8_chr7_118179164_118209035	0/0	c0002	291	8	8	0	0	0	0	copy fasta	LSM8	chr7	118179164	118209035
LSMEM1_chr7_112475991_112496062	1/1	c0001	396	402	92	78	165	18	47	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	c0002	396	1	0	0	0	0	1	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM1_chr7_112475991_112496062	0/0	c0003	396	1	0	0	1	0	0	copy fasta	LSMEM1	chr7	112475991	112496062
LSMEM2_chr3_50274087_50293114	1/1	c0001	495	353	72	64	169	14	32	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	c0002	495	16	14	2	0	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	c0003	495	2	2	0	0	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	c0004	495	1	0	0	1	0	0	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	c0005	495	1	0	0	0	0	1	copy fasta	LSMEM2	chr3	50274087	50293114
LSMEM2_chr3_50274087_50293114	0/0	c0006	495	1	0	0	0	0	1	copy fasta	LSMEM2	chr3	50274087	50293114
LSP1_chr11_1848084_1897263	1/1	c0001	1020	111	24	23	39	7	16	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0002	1020	74	3	20	44	3	4	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0003	1020	72	15	19	23	5	10	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0004	1020	47	16	10	18	0	3	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0005	1020	25	9	2	10	0	4	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0006	1020	16	8	2	5	1	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0007	1020	2	0	2	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0008	1020	2	2	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0009	1020	2	2	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0010	1020	1	0	0	1	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0011	1020	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263