JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LSP1_chr11_1848084_1897263	0/0	c0012	1020	1	0	0	1	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0013	1020	1	0	0	0	0	1	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0014	1020	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0015	1020	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0016	1020	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0017	1020	1	1	0	0	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSP1_chr11_1848084_1897263	0/0	c0018	1020	1	0	0	1	0	0	copy fasta	LSP1	chr11	1848084	1897263
LSR_chr19_35244002_35272964	0/1	c0001	1809	140	29	32	47	8	23	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	1/0	c0002	1806	112	31	5	69	2	4	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0003	1809	81	6	22	36	3	14	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0004	1806	51	2	11	33	1	4	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0005	1806	22	6	2	14	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0006	1809	15	15	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0007	1806	3	3	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0008	1806	1	0	0	1	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0009	1809	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0010	1809	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0011	1806	1	0	0	0	0	1	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0012	1809	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0013	1809	1	0	1	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0014	1809	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0015	1809	1	0	0	1	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0016	1806	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0017	1806	1	0	1	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0018	1809	1	0	1	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0019	1809	1	0	1	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0020	1806	1	1	0	0	0	0	copy fasta	LSR	chr19	35244002	35272964
LSR_chr19_35244002_35272964	0/0	c0021	1806	1	0	0	1	0	0	copy fasta	LSR	chr19	35244002	35272964
LSS_chr21_46183446_46233774	0/0	c0001	2199	94	6	13	69	2	4	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	1/0	c0002	2199	77	5	18	35	6	12	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0003	2199	45	9	8	14	2	12	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/1	c0004	2199	41	9	14	7	3	7	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0005	2199	27	17	1	3	0	6	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0006	2199	19	12	4	1	1	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0007	2199	11	11	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0008	2199	9	2	5	0	1	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0009	2199	7	5	2	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0010	2199	3	3	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0011	2199	3	2	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0012	2199	3	0	0	3	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0013	2199	2	2	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0014	2199	2	2	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0015	2199	2	2	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0016	2199	2	0	0	2	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0017	2199	1	1	0	0	0	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0018	2199	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0019	2199	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0020	2199	1	0	0	0	1	0	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0021	2199	1	0	0	0	0	1	copy fasta	LSS	chr21	46183446	46233774
LSS_chr21_46183446_46233774	0/0	c0022	2199	1	0	1	0	0	0	copy fasta	LSS	chr21	46183446	46233774