JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTB4R_chr14_24306502_24323036	0/0	c0009	1059	1	0	0	0	0	1	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0010	1059	1	0	0	1	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0011	1059	1	0	0	1	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTB4R_chr14_24306502_24323036	0/0	c0012	1059	1	0	1	0	0	0	copy fasta	LTB4R	chr14	24306502	24323036
LTBP1_chr2_32941953_33404509	0/0	c0001	5166	30	12	6	5	0	7	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/1	c0002	5166	19	5	4	1	0	8	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0003	5166	17	2	9	2	1	3	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0004	5166	9	0	3	1	2	3	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0005	5166	7	0	3	3	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0006	5166	6	4	2	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0007	5166	5	0	2	2	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0008	5166	4	4	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0009	5166	4	4	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0010	5166	4	1	1	1	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0011	5166	3	1	2	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0012	5166	3	2	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0013	5166	3	3	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0014	5166	2	0	0	1	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0015	5166	2	0	0	2	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0016	5166	2	2	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0017	5166	2	1	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0018	5166	2	1	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0019	5166	2	2	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0020	5166	2	1	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0021	5166	2	0	0	1	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0022	5166	2	1	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0023	5166	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0024	5166	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0025	5166	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0026	5166	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0027	5166	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0028	5166	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0029	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0030	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0031	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0032	5166	1	0	0	0	1	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0033	5166	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0034	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0035	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0036	5166	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0037	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0038	5166	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	1/0	c0039	5166	1	0	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0040	5166	1	0	1	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0041	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0042	5166	1	0	0	0	0	1	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0043	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0044	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0045	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0046	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509