JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTBP1_chr2_32941953_33404509	0/0	c0047	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0048	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0049	5166	1	0	0	1	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0050	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0051	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0052	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0053	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP1_chr2_32941953_33404509	0/0	c0054	5166	1	1	0	0	0	0	copy fasta	LTBP1	chr2	32941953	33404509
LTBP2_chr14_74493183_74617237	0/0	c0001	5466	72	24	25	15	4	4	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/1	c0002	5466	56	13	6	20	6	10	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	1/0	c0003	5466	55	6	12	26	3	7	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0004	5466	16	1	6	9	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0005	5466	9	0	0	7	0	2	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0006	5466	6	0	4	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0007	5466	5	2	0	3	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0008	5466	4	0	4	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0009	5466	3	3	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0010	5466	3	3	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0011	5466	3	1	2	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0012	5466	2	0	0	0	0	2	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0013	5466	2	2	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0014	5466	2	2	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0015	5466	2	1	1	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0016	5466	2	0	0	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0017	5466	2	0	0	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0018	5466	2	0	0	1	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0019	5466	2	2	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0020	5466	2	0	0	2	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0021	5466	2	2	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0022	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0023	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0024	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0025	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0026	5466	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0027	5466	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0028	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0029	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0030	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0031	5466	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0032	5466	1	0	0	0	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0033	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0034	5466	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0035	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0036	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0037	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0038	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0039	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0040	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0041	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0042	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237