JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTBP2_chr14_74493183_74617237	0/0	c0043	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0044	5466	1	0	0	1	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0045	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0046	5466	1	0	0	0	0	1	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0047	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0048	5466	1	0	0	0	1	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0049	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0050	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP2_chr14_74493183_74617237	0/0	c0051	5466	1	1	0	0	0	0	copy fasta	LTBP2	chr14	74493183	74617237
LTBP3_chr11_65533559_65563359	1/0	c0001	3912	195	67	21	79	7	20	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/1	c0002	3918	23	1	7	9	3	2	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0003	3912	23	1	0	22	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0004	3913	14	1	4	6	0	3	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0005	3912	13	1	2	6	1	3	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0006	3903	7	7	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0007	3912	6	0	0	6	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0008	3912	5	5	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0009	3915	4	2	1	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0010	3913	4	0	0	4	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0011	3912	4	3	1	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0012	3918	2	2	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0013	3912	2	0	0	2	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0014	3919	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0015	3918	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0016	3915	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0017	3913	1	1	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0018	3913	1	1	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0019	3913	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0020	3913	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0021	3912	1	0	0	0	0	1	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0022	3912	1	1	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0023	3912	1	1	0	0	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0024	3912	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0025	3912	1	0	0	0	1	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0026	3912	1	0	0	0	0	1	copy fasta	LTBP3	chr11	65533559	65563359
LTBP3_chr11_65533559_65563359	0/0	c0027	3912	1	0	0	1	0	0	copy fasta	LTBP3	chr11	65533559	65563359
LTBP4_chr19_40596369_40634818	1/0	c0001	4674	113	7	29	60	7	9	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/1	c0002	4674	90	24	12	38	2	13	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0003	4674	13	8	2	3	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0004	4674	11	0	0	10	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0005	4674	11	9	2	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0006	4674	11	9	1	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0007	4674	10	0	5	0	2	3	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0008	4674	6	0	0	6	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0009	4674	6	6	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0010	4674	4	4	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0011	4674	4	0	0	0	0	4	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0012	4674	3	3	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0013	4674	3	0	1	2	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0014	4674	3	3	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818