JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTBP4_chr19_40596369_40634818	0/0	c0015	4674	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0016	4674	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0017	4674	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0018	4674	2	0	2	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0019	4674	2	0	0	0	0	2	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0020	4674	2	1	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0021	4674	2	1	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0022	4674	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0023	4674	2	0	1	0	1	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0024	4674	2	2	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0025	4674	2	1	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0026	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0027	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0028	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0029	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0030	4674	1	0	0	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0031	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0032	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0033	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0034	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0035	4674	1	0	0	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0036	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0037	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0038	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0039	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0040	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0041	4674	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0042	4674	1	0	0	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0043	4674	1	0	0	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0044	4674	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0045	4674	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0046	4674	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0047	4674	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0048	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0049	4674	1	0	1	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0050	4674	1	0	0	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0051	4674	1	0	0	0	0	1	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0052	4674	1	1	0	0	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBP4_chr19_40596369_40634818	0/0	c0053	4674	1	0	0	1	0	0	copy fasta	LTBP4	chr19	40596369	40634818
LTBR_chr12_6379162_6396566	0/1	c0001	1308	358	82	53	173	10	39	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	1/0	c0002	1308	73	2	18	38	5	9	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0003	1308	6	6	0	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0004	1308	6	6	0	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0005	1308	3	0	0	3	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0006	1308	1	0	1	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0007	1308	1	0	0	0	1	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0008	1266	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0009	1308	1	0	1	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0010	1308	1	0	1	0	0	0	copy fasta	LTBR	chr12	6379162	6396566
LTBR_chr12_6379162_6396566	0/0	c0011	1308	1	0	0	1	0	0	copy fasta	LTBR	chr12	6379162	6396566