JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTB_chr6_31575558_31587424	0/1	c0001	735	397	77	68	191	18	42	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	c0002	735	8	1	2	5	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	c0003	735	2	2	0	0	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	c0004	735	1	0	0	1	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	c0005	735	1	0	0	1	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	c0006	735	1	1	0	0	0	0	copy fasta	LTB	chr6	31575558	31587424
LTB_chr6_31575558_31587424	0/0	c0007	735	1	1	0	0	0	0	copy fasta	LTB	chr6	31575558	31587424
LTC4S_chr5_179788986_179801647	1/1	c0001	453	414	87	80	189	14	42	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	c0002	453	2	2	0	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	c0003	453	1	0	0	1	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTC4S_chr5_179788986_179801647	0/0	c0004	453	1	1	0	0	0	0	copy fasta	LTC4S	chr5	179788986	179801647
LTF_chr3_46430645_46469905	0/0	c0001	2136	75	14	9	39	6	7	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0002	2136	57	9	12	27	0	9	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0003	2136	49	0	4	42	0	3	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0004	2136	43	2	10	18	6	7	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0005	2136	33	0	0	32	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/1	c0006	2136	23	1	16	0	2	3	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0007	2136	19	17	2	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0008	2136	17	16	1	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0009	2136	12	0	0	12	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0010	2136	12	0	5	0	0	7	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0011	2136	9	1	5	2	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0012	2136	8	0	0	8	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0013	2136	5	0	3	1	1	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0014	2136	5	3	2	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0015	2136	5	4	1	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0016	2136	5	0	0	5	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0017	2136	3	0	0	3	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0018	2136	3	3	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0019	2136	2	1	1	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0020	2136	2	2	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0021	2136	2	2	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0022	2136	2	0	0	2	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0023	2136	2	2	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0024	2136	2	2	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0025	2136	2	0	0	2	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0026	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0027	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0028	2136	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0029	2136	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0030	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0031	2136	1	0	1	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0032	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0033	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0034	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0035	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0036	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0037	2136	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0038	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0039	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905