JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTF_chr3_46430645_46469905	0/0	c0040	2136	1	0	0	0	1	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0041	2136	1	0	0	0	0	1	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0042	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0043	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0044	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0045	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0046	2136	1	0	0	1	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0047	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0048	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0049	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0050	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0051	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0052	2133	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	1/0	c0053	2133	1	0	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0054	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0055	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTF_chr3_46430645_46469905	0/0	c0056	2136	1	1	0	0	0	0	copy fasta	LTF	chr3	46430645	46469905
LTK_chr15_41498637_41518827	1/1	c0001	2595	300	72	62	119	12	33	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0002	2595	70	9	3	56	0	2	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0003	2595	16	0	7	6	2	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0004	2595	10	0	0	10	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0005	2595	10	7	0	0	0	3	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0006	2595	6	6	0	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0007	2595	3	0	3	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0008	2595	3	0	0	1	0	2	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0009	2595	2	0	1	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0010	2595	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0011	2605	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0012	2595	1	0	0	0	0	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0013	2595	1	0	1	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0014	2595	1	0	0	0	0	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0015	2595	1	0	0	0	0	1	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0016	2595	1	0	1	0	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0017	2595	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0018	2595	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTK_chr15_41498637_41518827	0/0	c0019	2595	1	0	0	1	0	0	copy fasta	LTK	chr15	41498637	41518827
LTN1_chr21_28923144_28997877	0/0	c0001	5301	86	29	17	28	2	10	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	1/0	c0002	5301	77	12	17	35	2	10	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0003	5301	58	0	10	47	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0004	5301	51	9	3	35	1	3	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0005	5301	38	3	5	30	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0006	5301	21	3	6	11	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/1	c0007	5301	16	12	3	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0008	5301	12	1	3	0	1	7	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0009	5301	9	7	2	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0010	5301	6	0	3	0	1	2	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0011	5301	5	1	2	0	2	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0012	5301	5	5	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0013	5301	3	3	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0014	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877