JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD17_chr4_73068376_73263798	0/0	c0024	7812	1	0	0	1	0	0	copy fasta	ANKRD17	chr4	73068376	73263798
ANKRD18A_chr9_38566364_38625596	1/1	c0001	2979	100	12	17	44	2	23	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0002	2979	88	10	14	53	4	7	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0003	2979	78	20	8	43	4	3	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0004	2979	46	10	2	31	3	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0005	2979	8	3	5	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0006	2979	7	3	3	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0007	2979	6	5	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0008	2979	6	0	2	3	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0009	2979	5	5	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0010	2979	4	4	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0011	2979	4	0	4	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0012	2979	4	3	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0013	2979	3	1	0	0	0	2	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0014	2979	3	0	0	2	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0015	2979	3	1	0	2	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0016	2979	3	2	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0017	2979	2	0	1	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0018	2979	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0019	2979	2	0	2	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0020	2979	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0021	2979	2	1	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0022	2979	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0023	2979	2	2	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0024	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0025	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0026	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0027	2979	1	0	0	0	0	1	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0028	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0029	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0030	2979	1	0	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0031	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0032	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0033	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0034	2979	1	0	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0035	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0036	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0037	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0038	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0039	2979	1	0	0	0	1	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0040	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0041	2979	1	0	1	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0042	2979	1	1	0	0	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18A_chr9_38566364_38625596	0/0	c0043	2979	1	0	0	1	0	0	copy fasta	ANKRD18A	chr9	38566364	38625596
ANKRD18B_chr9_33519251_33578013	0/1	c0001	3342	139	19	19	79	3	18	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	c0002	3342	52	2	10	31	3	6	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	1/0	c0003	3342	49	19	7	20	0	2	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	c0004	3342	27	2	7	11	2	5	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	c0005	3342	12	1	2	5	1	3	copy fasta	ANKRD18B	chr9	33519251	33578013
ANKRD18B_chr9_33519251_33578013	0/0	c0006	3342	9	9	0	0	0	0	copy fasta	ANKRD18B	chr9	33519251	33578013