JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LTN1_chr21_28923144_28997877	0/0	c0015	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0016	5300	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0017	5301	1	0	1	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0018	5301	1	0	0	0	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0019	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0020	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0021	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0022	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0023	5301	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0024	5301	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0025	5301	1	0	0	0	1	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0026	5301	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0027	5301	1	1	0	0	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0028	5301	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0029	5301	1	0	0	1	0	0	copy fasta	LTN1	chr21	28923144	28997877
LTN1_chr21_28923144_28997877	0/0	c0030	5301	1	0	0	0	0	1	copy fasta	LTN1	chr21	28923144	28997877
LTO1_chr11_69660563_69680353	1/1	c0001	414	312	86	67	100	18	39	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	c0002	414	10	10	0	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	c0003	414	3	2	1	0	0	0	copy fasta	LTO1	chr11	69660563	69680353
LTO1_chr11_69660563_69680353	0/0	c0004	414	1	0	0	0	0	1	copy fasta	LTO1	chr11	69660563	69680353
LTV1_chr6_143838338_143868812	0/0	c0001	1428	357	54	61	193	6	43	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0002	1428	22	19	3	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0003	1428	16	9	4	0	0	3	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0004	1428	4	0	0	4	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0005	1428	3	3	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0006	1428	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0007	1428	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0008	1428	2	2	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0009	1428	1	0	0	1	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0010	1428	1	0	0	1	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0011	1428	1	1	0	0	0	0	copy fasta	LTV1	chr6	143838338	143868812
LTV1_chr6_143838338_143868812	0/0	c0012	1428	1	0	0	1	0	0	copy fasta	LTV1	chr6	143838338	143868812
LUC7L2_chr7_139354894_139428454	1/1	c0001	1179	266	77	41	106	12	28	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	c0002	1179	5	5	0	0	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	c0003	1179	4	0	0	4	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L2_chr7_139354894_139428454	0/0	c0004	1179	1	0	1	0	0	0	copy fasta	LUC7L2	chr7	139354894	139428454
LUC7L3_chr17_50714603_50761219	1/1	c0001	1299	388	87	73	178	12	36	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	c0002	1299	2	1	1	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	c0003	1299	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L3_chr17_50714603_50761219	0/0	c0004	1299	1	1	0	0	0	0	copy fasta	LUC7L3	chr17	50714603	50761219
LUC7L_chr16_183990_234449	1/1	c0001	1116	344	86	62	144	12	38	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	c0002	1116	2	2	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	c0003	1116	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	c0004	1116	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	c0005	1116	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUC7L_chr16_183990_234449	0/0	c0006	1116	1	1	0	0	0	0	copy fasta	LUC7L	chr16	183990	234449
LUM_chr12_91097629_91116494	1/1	c0001	1017	317	91	58	123	12	31	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	c0002	1017	60	4	3	48	0	5	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	c0003	1017	2	0	0	2	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	c0004	1017	2	0	0	2	0	0	copy fasta	LUM	chr12	91097629	91116494