JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LUM_chr12_91097629_91116494	0/0	c0005	1017	1	1	0	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	c0006	1017	1	0	1	0	0	0	copy fasta	LUM	chr12	91097629	91116494
LUM_chr12_91097629_91116494	0/0	c0007	1017	1	0	0	1	0	0	copy fasta	LUM	chr12	91097629	91116494
LURAP1L_chr9_12770020_12828060	0/1	c0001	696	276	41	64	135	9	26	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	1/0	c0002	687	101	26	3	49	5	17	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0003	693	15	7	6	0	2	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0004	690	6	6	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0005	693	6	6	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0006	696	3	3	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0007	693	2	2	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0008	693	2	2	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0009	693	2	0	2	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0010	702	1	0	0	0	0	1	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0011	699	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0012	696	1	0	1	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0013	687	1	0	0	1	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1L_chr9_12770020_12828060	0/0	c0014	696	1	1	0	0	0	0	copy fasta	LURAP1L	chr9	12770020	12828060
LURAP1_chr1_46198334_46226256	1/1	c0001	720	342	85	63	143	13	36	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0002	720	5	0	1	0	2	2	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0003	720	3	0	2	0	1	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0004	720	2	2	0	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0005	720	1	1	0	0	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0006	720	1	0	0	0	0	1	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0007	720	1	0	0	1	0	0	copy fasta	LURAP1	chr1	46198334	46226256
LURAP1_chr1_46198334_46226256	0/0	c0008	720	1	0	0	0	0	1	copy fasta	LURAP1	chr1	46198334	46226256
LUZP1_chr1_23079030_23173856	0/1	c0001	3231	159	20	27	89	5	17	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	1/0	c0002	3231	76	6	19	36	1	13	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0003	3231	22	19	3	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0004	3231	15	13	2	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0005	3231	8	4	4	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0006	3231	8	6	2	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0007	3231	6	5	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0008	3231	6	6	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0009	3231	5	0	2	3	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0010	3231	3	0	0	3	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0011	3231	2	1	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0012	3231	2	0	0	2	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0013	3231	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0014	3231	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0015	3231	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0016	3231	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0017	3231	1	0	1	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0018	3231	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0019	3231	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0020	3231	1	0	0	1	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0021	3231	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP1_chr1_23079030_23173856	0/0	c0022	3231	1	1	0	0	0	0	copy fasta	LUZP1	chr1	23079030	23173856
LUZP2_chr11_24492053_25087638	0/0	c0001	1041	69	42	10	9	3	5	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	c0002	1041	30	5	6	11	1	7	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	c0003	1041	12	11	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638