JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LUZP2_chr11_24492053_25087638	0/0	c0004	1041	2	2	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	c0005	1041	1	0	1	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP2_chr11_24492053_25087638	0/0	c0007	1041	1	1	0	0	0	0	copy fasta	LUZP2	chr11	24492053	25087638
LUZP4_chrX_115284715_115312563	1/1	c0001	942	245	62	34	111	9	27	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0002	942	18	0	7	10	0	1	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0003	942	9	8	1	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0004	942	2	0	2	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0005	942	2	2	0	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0006	942	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0007	963	1	0	1	0	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0008	943	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LUZP4_chrX_115284715_115312563	0/0	c0009	942	1	0	0	1	0	0	copy fasta	LUZP4	chrX	115284715	115312563
LVRN_chr5_115957475_116032606	0/1	c0001	2973	109	10	25	52	4	17	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0002	2973	86	18	17	39	6	6	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	1/0	c0003	2973	67	1	17	37	1	10	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0004	2973	39	16	4	17	0	2	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0005	2973	25	11	4	9	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0006	2973	11	4	0	7	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0007	2973	11	6	1	3	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0008	2973	10	0	0	9	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0009	2973	8	0	4	0	1	3	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0010	2973	7	0	0	7	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0011	2973	6	3	0	2	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0012	2973	5	5	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0013	2973	3	0	0	3	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0014	2973	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0015	2973	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0016	2973	2	2	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0017	2973	2	1	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0018	2973	2	0	0	2	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0019	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0020	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0021	2973	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0022	2973	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0023	2973	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0024	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0025	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0026	2973	1	0	0	1	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0027	2973	1	0	1	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0028	2973	1	0	0	0	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0029	2973	1	0	0	0	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0030	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0031	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0032	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0033	2973	1	0	0	0	0	1	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0034	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0035	2973	1	0	1	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0036	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0037	2973	1	0	0	0	0	1	copy fasta	LVRN	chr5	115957475	116032606