JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LVRN_chr5_115957475_116032606	0/0	c0038	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LVRN_chr5_115957475_116032606	0/0	c0039	2973	1	1	0	0	0	0	copy fasta	LVRN	chr5	115957475	116032606
LXN_chr3_158661414_158677648	0/0	c0001	669	216	60	31	94	8	23	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	1/1	c0002	669	185	16	31	104	7	25	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0003	669	15	15	0	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0004	669	2	1	1	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0005	669	2	0	0	0	2	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0006	669	2	2	0	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0007	669	1	0	0	0	1	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0008	669	1	0	1	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0009	669	1	1	0	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LXN_chr3_158661414_158677648	0/0	c0010	669	1	1	0	0	0	0	copy fasta	LXN	chr3	158661414	158677648
LY6D_chr8_142779882_142791539	1/1	c0001	387	288	47	48	159	11	21	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	c0002	387	138	42	30	40	7	19	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	c0003	387	3	0	0	3	0	0	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	c0004	387	2	2	0	0	0	0	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	c0005	387	1	0	0	0	0	1	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	c0006	387	1	0	0	0	0	1	copy fasta	LY6D	chr8	142779882	142791539
LY6D_chr8_142779882_142791539	0/0	c0007	387	1	1	0	0	0	0	copy fasta	LY6D	chr8	142779882	142791539
LY6E_chr8_143013529_143027409	0/1	c0001	396	331	92	71	121	14	32	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	c0002	396	39	0	2	31	0	6	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	c0003	396	2	2	0	0	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	c0004	396	2	0	0	2	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	c0005	396	2	0	1	1	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6E_chr8_143013529_143027409	0/0	c0006	396	1	0	0	1	0	0	copy fasta	LY6E	chr8	143013529	143027409
LY6G5B_chr6_31664976_31678546	0/1	c0001	606	304	47	66	143	13	34	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0002	606	34	14	4	14	1	1	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0003	606	30	11	5	3	3	8	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0004	606	19	7	2	9	0	1	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0005	606	9	9	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0006	606	8	1	1	6	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0007	606	6	0	0	6	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0008	419	2	0	0	0	0	2	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0009	606	1	0	0	1	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0010	606	1	1	0	0	0	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5B_chr6_31664976_31678546	0/0	c0011	644	1	0	0	0	1	0	copy fasta	LY6G5B	chr6	31664976	31678546
LY6G5C_chr6_31671684_31686067	0/1	c0001	453	412	91	77	189	15	39	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	c0002	453	7	1	1	2	1	2	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G5C_chr6_31671684_31686067	0/0	c0003	453	4	0	0	1	0	3	copy fasta	LY6G5C	chr6	31671684	31686067
LY6G6C_chr6_31713648_31726746	0/1	c0001	378	268	46	57	118	15	31	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	c0002	378	116	42	24	36	3	11	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	c0003	378	12	0	0	12	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	c0004	378	2	2	0	0	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6C_chr6_31713648_31726746	0/0	c0005	378	1	0	1	0	0	0	copy fasta	LY6G6C	chr6	31713648	31726746
LY6G6D_chr6_31710348_31722919	0/1	c0001	402	332	71	72	129	17	42	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	c0002	402	42	17	6	17	1	1	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	c0003	402	20	0	0	20	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	c0004	402	3	3	0	0	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	c0005	402	2	0	2	0	0	0	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6D_chr6_31710348_31722919	0/0	c0006	402	1	1	0	0	0	0	copy fasta	LY6G6D	chr6	31710348	31722919