JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LY6G6D_chr6_31710348_31722919	0/0	c0007	402	1	0	0	0	0	1	copy fasta	LY6G6D	chr6	31710348	31722919
LY6G6F_chr6_31701866_31715679	0/1	c0001	894	242	37	47	111	13	33	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0002	894	72	7	18	43	1	3	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0003	894	46	23	5	17	1	0	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0004	894	43	22	7	5	3	6	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0005	894	15	2	0	12	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0006	894	3	1	1	0	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0007	894	1	0	0	0	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0008	894	1	1	0	0	0	0	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0009	894	1	0	0	0	0	1	copy fasta	LY6G6F	chr6	31701866	31715679
LY6G6F_chr6_31701866_31715679	0/0	c0010	894	1	1	0	0	0	0	copy fasta	LY6G6F	chr6	31701866	31715679
LY6H_chr8_143152916_143165321	0/1	c0001	486	243	28	56	116	8	34	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	c0002	486	157	32	27	75	8	15	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	c0003	486	39	38	1	0	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	c0004	486	1	0	0	0	0	1	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	c0005	486	1	0	0	1	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	c0006	496	1	0	0	1	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6H_chr8_143152916_143165321	0/0	c0007	486	1	0	0	1	0	0	copy fasta	LY6H	chr8	143152916	143165321
LY6K_chr8_142695111_142710127	1/1	c0001	498	234	31	43	126	8	24	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	c0002	498	186	51	25	86	6	18	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	c0003	498	2	0	0	0	0	2	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	c0004	498	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	c0005	498	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	c0006	498	1	0	0	1	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6K_chr8_142695111_142710127	0/0	c0007	498	1	1	0	0	0	0	copy fasta	LY6K	chr8	142695111	142710127
LY6L_chr8_143075630_143088486	1/1	c0001	417	423	88	79	197	14	43	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	c0002	417	3	3	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	c0003	417	1	0	0	0	0	1	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	c0004	417	1	1	0	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	c0005	417	1	0	0	1	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY6L_chr8_143075630_143088486	0/0	c0006	417	1	0	1	0	0	0	copy fasta	LY6L	chr8	143075630	143088486
LY75_chr2_159798355_159909756	0/0	c0001	5169	39	3	5	30	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0002	5169	36	1	5	28	0	2	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0003	5169	34	1	1	26	3	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0004	5169	19	0	3	7	1	8	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0005	5169	18	18	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0006	5169	17	0	0	15	0	2	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0007	5169	16	2	11	0	2	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0008	5169	12	11	1	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0009	5169	11	0	10	1	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0010	5169	9	0	4	1	1	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0011	5169	8	0	0	8	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0012	5169	8	5	2	0	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0013	5169	7	0	1	6	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/1	c0014	5169	7	0	2	3	0	1	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0015	5169	7	0	0	7	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0016	5169	6	0	1	0	2	3	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0017	5169	4	0	0	4	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0018	5169	4	4	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756
LY75_chr2_159798355_159909756	0/0	c0019	5169	3	3	0	0	0	0	copy fasta	LY75	chr2	159798355	159909756