JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LY86_chr6_6583720_6659982	1/1	c0001	489	403	80	69	188	18	46	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	c0002	489	13	12	1	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	c0003	489	4	3	1	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	c0004	489	3	3	0	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY86_chr6_6583720_6659982	0/0	c0005	489	1	0	1	0	0	0	copy fasta	LY86	chr6	6583720	6659982
LY96_chr8_73986392_74034079	0/1	c0001	483	301	80	59	118	14	29	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	1/0	c0002	483	4	1	1	0	0	1	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	c0003	371	3	3	0	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	c0004	483	3	0	3	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	c0005	483	1	0	1	0	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	c0006	483	1	0	0	1	0	0	copy fasta	LY96	chr8	73986392	74034079
LY96_chr8_73986392_74034079	0/0	c0007	483	1	0	0	1	0	0	copy fasta	LY96	chr8	73986392	74034079
LY9_chr1_160791174_160833255	0/0	c0001	1968	241	50	34	119	11	27	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	1/1	c0002	1968	108	13	25	54	5	9	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0003	1968	13	12	1	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0004	1968	13	13	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0005	1968	5	0	1	0	0	4	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0006	1968	3	3	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0007	1968	2	0	0	2	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0008	1968	1	1	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0009	1968	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0010	1968	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0011	1968	1	1	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0012	1968	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0013	1968	1	0	1	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0014	1968	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0015	1968	1	0	0	1	0	0	copy fasta	LY9	chr1	160791174	160833255
LY9_chr1_160791174_160833255	0/0	c0016	1968	1	1	0	0	0	0	copy fasta	LY9	chr1	160791174	160833255
LYAR_chr4_4262701_4295154	1/1	c0001	1140	371	81	68	163	17	40	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0002	1140	46	2	1	39	0	4	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0003	1140	6	0	5	0	1	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0004	1140	3	0	0	3	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0005	1140	2	2	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0006	1140	2	0	0	2	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0007	1140	1	1	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0008	1140	1	0	1	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0009	1140	1	1	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0010	1140	1	0	0	1	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0011	1140	1	0	1	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYAR_chr4_4262701_4295154	0/0	c0012	1140	1	1	0	0	0	0	copy fasta	LYAR	chr4	4262701	4295154
LYG1_chr2_99279238_99306197	1/1	c0001	585	348	82	79	137	10	38	copy fasta	LYG1	chr2	99279238	99306197
LYG1_chr2_99279238_99306197	0/0	c0002	585	3	3	0	0	0	0	copy fasta	LYG1	chr2	99279238	99306197
LYG1_chr2_99279238_99306197	0/0	c0003	585	1	0	0	1	0	0	copy fasta	LYG1	chr2	99279238	99306197
LYG1_chr2_99279238_99306197	0/0	c0004	585	1	1	0	0	0	0	copy fasta	LYG1	chr2	99279238	99306197
LYG1_chr2_99279238_99306197	0/0	c0005	585	1	0	1	0	0	0	copy fasta	LYG1	chr2	99279238	99306197
LYG2_chr2_99237246_99260666	1/1	c0001	639	418	81	80	199	10	46	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	c0002	639	2	2	0	0	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	c0003	639	2	2	0	0	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	c0004	639	1	0	0	1	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	c0005	639	1	0	0	1	0	0	copy fasta	LYG2	chr2	99237246	99260666