JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LYG2_chr2_99237246_99260666	0/0	c0006	639	1	0	0	1	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYG2_chr2_99237246_99260666	0/0	c0007	639	1	1	0	0	0	0	copy fasta	LYG2	chr2	99237246	99260666
LYL1_chr19_13094033_13107858	1/1	c0001	843	344	85	73	125	14	45	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	c0002	843	14	14	0	0	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	c0003	843	3	1	2	0	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	c0004	843	2	0	2	0	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	c0005	843	2	0	1	0	0	1	copy fasta	LYL1	chr19	13094033	13107858
LYL1_chr19_13094033_13107858	0/0	c0006	843	1	0	0	1	0	0	copy fasta	LYL1	chr19	13094033	13107858
LYNX1_chr8_142766202_142782202	1/1	c0001	351	440	89	80	205	18	46	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	c0002	351	3	3	0	0	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYNX1_chr8_142766202_142782202	0/0	c0003	351	1	0	0	1	0	0	copy fasta	LYNX1	chr8	142766202	142782202
LYN_chr8_55874835_56019169	1/1	c0001	1539	235	45	48	92	16	32	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	c0002	1539	40	29	1	10	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	c0003	1539	9	8	1	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	c0004	1539	3	3	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYN_chr8_55874835_56019169	0/0	c0005	1539	1	1	0	0	0	0	copy fasta	LYN	chr8	55874835	56019169
LYPD1_chr2_132638286_132675205	1/1	c0001	426	351	96	56	159	12	26	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	c0002	426	1	0	0	1	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	c0003	426	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD1_chr2_132638286_132675205	0/0	c0004	426	1	1	0	0	0	0	copy fasta	LYPD1	chr2	132638286	132675205
LYPD2_chr8_142745150_142757532	1/0	c0001	378	285	75	53	116	15	25	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/1	c0002	378	102	15	13	59	1	13	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	c0003	378	3	3	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	c0004	378	2	2	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	c0005	378	1	1	0	0	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	c0006	378	1	0	0	1	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	c0007	378	1	0	0	1	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD2_chr8_142745150_142757532	0/0	c0008	378	1	0	0	1	0	0	copy fasta	LYPD2	chr8	142745150	142757532
LYPD3_chr19_43455787_43470608	1/1	c0001	1041	423	77	72	208	16	48	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0002	1041	9	7	2	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0003	1041	7	7	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0004	1041	4	4	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0005	1041	2	0	0	2	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0007	1041	1	0	1	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0008	1041	1	1	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0009	1041	1	1	0	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD3_chr19_43455787_43470608	0/0	c0010	1041	1	0	1	0	0	0	copy fasta	LYPD3	chr19	43455787	43470608
LYPD4_chr19_41832074_41849683	1/0	c0001	741	244	74	39	104	7	19	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/1	c0002	741	166	5	25	103	10	22	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0003	741	10	2	7	0	0	1	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0004	741	2	2	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0005	741	1	0	1	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0006	741	1	0	0	0	0	1	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0007	741	1	0	0	1	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0008	741	1	0	0	0	1	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0009	741	1	1	0	0	0	0	copy fasta	LYPD4	chr19	41832074	41849683
LYPD4_chr19_41832074_41849683	0/0	c0010	741	1	0	0	0	0	1	copy fasta	LYPD4	chr19	41832074	41849683
LYPD5_chr19_43790927_43807447	0/1	c0001	756	130	44	27	32	6	20	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	1/0	c0002	756	119	27	9	69	5	8	copy fasta	LYPD5	chr19	43790927	43807447