JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LYPD5_chr19_43790927_43807447	0/0	c0003	756	94	4	24	58	3	5	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0004	756	66	13	20	30	1	2	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0005	756	7	2	0	0	1	4	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0006	756	4	0	0	4	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0007	756	2	2	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0008	756	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0009	756	1	0	0	1	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0010	756	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0011	756	1	0	0	0	0	1	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0012	756	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD5_chr19_43790927_43807447	0/0	c0013	756	1	1	0	0	0	0	copy fasta	LYPD5	chr19	43790927	43807447
LYPD6B_chr2_149033699_149220262	1/1	c0001	624	261	72	50	103	8	26	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	c0002	624	2	2	0	0	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6B_chr2_149033699_149220262	0/0	c0003	624	1	0	0	1	0	0	copy fasta	LYPD6B	chr2	149033699	149220262
LYPD6_chr2_149325587_149479138	1/1	c0001	516	228	84	54	54	8	26	copy fasta	LYPD6	chr2	149325587	149479138
LYPD6_chr2_149325587_149479138	0/0	c0002	516	2	2	0	0	0	0	copy fasta	LYPD6	chr2	149325587	149479138
LYPD8_chr1_248734415_248760759	0/1	c0001	714	332	49	64	168	16	34	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	1/0	c0002	714	27	24	2	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0003	714	6	0	2	0	2	2	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0004	714	3	3	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0005	714	2	2	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0006	838	1	1	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0007	714	1	0	0	0	0	1	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0008	714	1	1	0	0	0	0	copy fasta	LYPD8	chr1	248734415	248760759
LYPD8_chr1_248734415_248760759	0/0	c0009	699	1	0	0	0	0	1	copy fasta	LYPD8	chr1	248734415	248760759
LYPLA1_chr8_54041367_54106947	1/1	c0001	693	285	68	60	116	10	29	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	c0002	693	16	16	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	c0003	693	3	3	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	c0004	693	1	0	0	0	0	1	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA1_chr8_54041367_54106947	0/0	c0005	693	1	1	0	0	0	0	copy fasta	LYPLA1	chr8	54041367	54106947
LYPLA2_chr1_23786145_23800539	1/1	c0001	696	383	90	82	162	16	31	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLA2_chr1_23786145_23800539	0/0	c0002	696	1	0	0	0	0	1	copy fasta	LYPLA2	chr1	23786145	23800539
LYPLAL1_chr1_219168878_219217858	0/1	c0001	714	331	69	61	151	18	31	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	1/0	c0002	714	16	14	1	0	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	c0003	714	9	9	0	0	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	c0004	714	1	0	0	0	0	1	copy fasta	LYPLAL1	chr1	219168878	219217858
LYPLAL1_chr1_219168878_219217858	0/0	c0005	714	1	0	0	1	0	0	copy fasta	LYPLAL1	chr1	219168878	219217858
LYRM1_chr16_20895771_20930006	1/1	c0001	369	376	88	62	168	16	40	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	c0002	369	5	5	0	0	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM1_chr16_20895771_20930006	0/0	c0003	369	1	1	0	0	0	0	copy fasta	LYRM1	chr16	20895771	20930006
LYRM2_chr6_89627224_89643747	1/0	c0001	267	327	74	51	158	16	27	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/1	c0002	267	42	11	7	8	2	13	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	c0003	267	24	0	8	16	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM2_chr6_89627224_89643747	0/0	c0004	267	1	1	0	0	0	0	copy fasta	LYRM2	chr6	89627224	89643747
LYRM4_chr6_5103419_5265950	1/1	c0001	276	156	13	33	73	10	25	copy fasta	LYRM4	chr6	5103419	5265950
LYRM4_chr6_5103419_5265950	0/0	c0002	276	130	71	19	33	4	3	copy fasta	LYRM4	chr6	5103419	5265950
LYRM7_chr5_131165944_131210428	1/1	c0001	315	293	93	62	98	10	28	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	c0002	315	4	0	4	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM7_chr5_131165944_131210428	0/0	c0003	315	3	3	0	0	0	0	copy fasta	LYRM7	chr5	131165944	131210428
LYRM9_chr17_27873358_27898365	1/1	c0001	237	393	90	70	173	18	40	copy fasta	LYRM9	chr17	27873358	27898365