JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LYRM9_chr17_27873358_27898365	0/0	c0002	237	1	0	0	1	0	0	copy fasta	LYRM9	chr17	27873358	27898365
LYSET_chr14_93180317_93193463	0/1	c0001	492	424	83	79	197	18	46	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	c0002	492	3	2	1	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	c0003	492	1	0	0	1	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSET_chr14_93180317_93193463	0/0	c0004	492	1	1	0	0	0	0	copy fasta	LYSET	chr14	93180317	93193463
LYSMD1_chr1_151154748_151170902	1/1	c0001	684	327	90	68	113	18	36	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	c0002	684	9	0	0	9	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	c0003	684	6	5	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	c0004	684	1	0	1	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD1_chr1_151154748_151170902	0/0	c0005	684	1	1	0	0	0	0	copy fasta	LYSMD1	chr1	151154748	151170902
LYSMD2_chr15_51718011_51742655	1/1	c0001	648	397	86	78	172	18	41	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	c0002	648	24	0	1	22	0	1	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	c0003	648	7	7	0	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	c0004	648	4	4	0	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	c0005	648	1	1	0	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD2_chr15_51718011_51742655	0/0	c0006	648	1	0	1	0	0	0	copy fasta	LYSMD2	chr15	51718011	51742655
LYSMD3_chr5_90510626_90534584	0/0	c0001	921	252	62	31	124	11	24	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0002	921	149	27	37	68	5	12	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0003	921	4	3	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0004	921	1	0	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0005	921	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0006	921	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0007	921	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	c0008	921	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD4_chr15_99722405_99738437	0/0	c0001	891	143	3	27	80	9	24	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	1/1	c0002	891	142	33	21	64	5	17	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0003	891	58	3	20	31	1	3	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0004	891	46	22	5	17	1	1	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0005	891	18	14	4	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0006	891	12	11	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0007	891	7	2	2	0	0	3	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0008	891	2	0	2	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0009	891	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0010	891	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0011	891	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0012	891	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0013	891	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0014	891	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	c0015	891	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYST_chr1_235656041_235871906	1/0	c0001	11406	95	7	25	44	4	14	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0002	11406	37	17	9	5	2	4	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/1	c0003	11406	23	2	9	7	2	2	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0004	11406	11	10	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0005	11406	10	8	2	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0006	11406	5	0	4	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0007	11406	5	5	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0008	11406	5	4	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0009	11406	3	3	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0010	11406	3	0	0	3	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0011	11406	3	1	2	0	0	0	copy fasta	LYST	chr1	235656041	235871906