JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LYST_chr1_235656041_235871906	0/0	c0012	11406	3	3	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0013	11406	2	0	0	2	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0014	11406	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0015	11406	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0016	11406	1	0	0	0	1	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0017	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0018	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0019	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0020	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0021	11406	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0022	11406	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0023	11406	1	0	0	0	1	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0024	11406	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0025	11406	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0026	11406	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0027	11406	1	0	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0028	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0029	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0030	11406	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0031	11406	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0032	11406	1	0	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0033	11406	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0034	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0035	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0036	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0037	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0038	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0039	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0040	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0041	11406	1	0	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	c0042	11406	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYVE1_chr11_10551966_10573665	1/1	c0001	969	368	75	74	162	16	39	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0002	969	12	12	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0003	969	5	1	2	0	0	2	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0004	969	5	5	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0005	969	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0006	969	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0007	969	1	0	0	0	0	1	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	c0008	969	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYZL1_chr10_29284070_29316232	1/0	c0001	447	260	41	57	135	5	21	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/1	c0002	447	118	22	16	61	4	14	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0003	447	30	16	3	9	0	2	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0004	447	24	10	4	5	3	2	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0005	447	3	0	0	3	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0006	447	2	0	0	0	0	2	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0007	447	2	2	0	0	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0008	447	1	0	0	0	0	1	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0009	447	1	1	0	0	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	c0010	447	1	0	0	1	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL2_chr10_30606779_30634753	1/1	c0001	447	296	51	49	156	9	29	copy fasta	LYZL2	chr10	30606779	30634753