JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LYZL2_chr10_30606779_30634753	0/0	c0002	447	140	34	32	51	8	15	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0003	447	10	9	1	0	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0004	447	3	0	0	3	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0005	447	1	1	0	0	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0006	447	1	0	0	1	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0007	447	1	0	0	0	0	1	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0008	447	1	0	0	1	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0009	447	1	0	0	0	0	1	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0010	447	1	1	0	0	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	c0011	447	1	0	0	0	1	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL4_chr3_42392083_42415610	1/1	c0001	441	319	80	60	115	17	45	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	c0002	441	59	0	3	50	1	5	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	c0003	441	16	15	1	0	0	0	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	c0004	441	1	1	0	0	0	0	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	c0005	441	1	0	0	1	0	0	copy fasta	LYZL4	chr3	42392083	42415610
LYZL6_chr17_35929518_35948713	0/0	c0001	447	236	57	42	107	8	22	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/1	c0002	447	53	13	6	26	2	5	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0003	447	53	8	2	32	0	11	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0004	447	29	2	15	9	2	1	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0005	447	22	0	0	22	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0006	447	10	10	0	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0007	447	3	3	0	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0008	447	2	2	0	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0009	447	2	0	0	1	0	1	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0010	447	2	0	0	0	2	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0011	447	1	0	0	1	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0012	447	1	1	0	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	c0013	447	1	0	1	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZ_chr12_69343381_69359234	1/1	c0001	447	443	91	73	216	15	46	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	c0002	447	4	0	3	0	1	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	c0003	447	2	2	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	c0004	447	1	1	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LZIC_chr1_9921293_9948391	1/1	c0001	573	368	86	62	170	10	38	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	c0002	573	2	0	0	2	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZTFL1_chr3_45818316_45847119	1/1	c0001	900	351	78	60	161	14	36	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	c0002	900	28	2	1	19	2	4	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	c0003	900	9	8	1	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	c0004	900	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	c0005	900	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTR1_chr22_20977297_21004032	1/0	c0001	2523	204	26	43	106	7	21	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/1	c0002	2523	106	18	22	41	8	16	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0003	2523	81	24	13	39	2	3	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0004	2523	14	4	1	7	0	2	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0005	2523	13	11	2	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0006	2523	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0007	2523	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0008	2523	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0009	2523	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0010	2523	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0011	2523	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032