JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LZTR1_chr22_20977297_21004032	0/0	c0012	2523	2	0	0	2	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0013	2523	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0014	2523	1	0	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0015	2523	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0016	2523	1	0	0	0	0	1	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0017	2523	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0018	2523	1	0	0	0	1	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0019	2523	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0020	2523	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0021	2523	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0022	2523	1	0	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0023	2523	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0024	2523	1	0	0	0	0	1	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0025	2523	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	c0026	2523	1	0	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTS1_chr8_20241165_20308963	1/0	c0001	1791	208	52	49	70	7	29	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/1	c0002	1791	143	33	23	69	6	11	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0003	1791	22	2	0	16	2	2	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0004	1791	16	4	0	10	0	2	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0005	1791	3	3	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0006	1791	3	0	2	0	1	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0007	1791	2	0	0	0	2	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0008	1791	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0009	1791	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0010	1791	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0011	1791	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0012	1791	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0013	1791	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0014	1791	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0015	1791	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	c0016	1791	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS2_chr10_100994808_101012833	1/0	c0001	2010	218	52	50	71	12	32	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0002	2010	151	34	19	85	3	10	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0003	2010	9	8	0	0	0	1	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0004	2010	5	0	0	5	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0005	2010	4	0	2	0	2	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/1	c0006	2010	3	0	1	0	0	1	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0007	2010	2	0	0	0	0	2	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0008	2010	2	0	0	2	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0009	2010	2	0	2	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0010	2010	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0011	2010	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0012	2010	1	0	1	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0013	2010	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0014	2010	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0015	2010	1	0	0	0	1	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0016	2010	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0017	2010	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0018	2010	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	c0019	2010	1	0	1	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833