JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LZTS3_chr20_3157617_3178549	0/1	c0001	2022	370	74	60	187	15	33	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0002	2022	28	5	11	2	1	9	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	1/0	c0003	2022	19	12	3	3	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0004	2022	4	3	1	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0005	2022	4	0	4	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0006	2022	2	0	0	0	0	2	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0007	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0008	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0009	2022	1	0	0	0	1	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0010	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0011	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0012	2022	1	0	0	0	0	1	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0013	2022	1	1	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0014	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0015	2022	1	1	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0016	2022	1	0	1	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0017	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0018	2022	1	0	0	0	1	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0019	2022	1	0	1	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0020	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0021	2022	1	0	1	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0022	2022	1	1	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0023	2022	1	1	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0024	2022	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	c0025	2022	1	0	0	0	0	1	copy fasta	LZTS3	chr20	3157617	3178549
M1AP_chr2_74552883_74653330	1/1	c0001	1593	221	76	41	84	2	16	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0002	1593	8	7	1	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0003	1593	5	0	0	5	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0004	1593	3	2	1	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0005	1593	3	3	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0006	1593	3	3	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0007	1593	1	0	0	1	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0008	1624	1	0	0	1	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0009	1593	1	1	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0010	1593	1	0	0	1	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	c0011	1593	1	0	1	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M6PR_chr12_8935361_8954645	1/1	c0001	834	340	89	72	130	10	37	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	c0002	837	58	0	4	43	4	7	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	c0003	837	4	0	0	4	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	c0004	834	1	0	0	1	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	c0005	834	1	1	0	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
MAB21L1_chr13_35468789_35481689	1/1	c0001	1080	464	100	72	222	18	50	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	c0002	1080	2	0	0	2	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L2_chr4_150577151_150589693	1/1	c0001	1080	415	94	64	201	12	42	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	c0002	1080	1	0	0	1	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L3_chr1_116106399_116143149	1/1	c0001	1089	219	9	45	129	10	24	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0002	1089	156	67	24	57	3	5	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0003	1089	22	19	2	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0004	1089	4	0	0	0	0	4	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	c0005	1089	3	0	3	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149