JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MACF1_chr1_39199695_39492138	0/0	c0044	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0045	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0046	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0047	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0048	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0049	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0050	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0051	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0052	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0053	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0054	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0055	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0056	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0057	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0058	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0059	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0060	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0061	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0062	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0063	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0064	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0065	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0066	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0067	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0068	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0069	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0070	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0071	22668	1	0	1	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0072	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	1/0	c0073	22668	1	0	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0074	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0075	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0076	22668	1	1	0	0	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACF1_chr1_39199695_39492138	0/0	c0077	22668	1	0	0	1	0	0	copy fasta	MACF1	chr1	39199695	39492138
MACIR_chr5_103253763_103283660	1/1	c0001	621	334	76	59	152	12	33	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	c0002	621	22	20	2	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	c0003	621	2	0	0	0	0	2	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	c0004	621	1	0	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	c0005	621	1	0	0	0	0	1	copy fasta	MACIR	chr5	103253763	103283660
MACO1_chr1_25425897_25505209	1/1	c0001	1995	276	83	47	98	14	32	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	c0002	1995	5	4	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	c0003	1995	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACROD1_chr11_63993558_64171113	1/0	c0001	978	98	18	22	40	1	16	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/1	c0002	978	96	51	12	14	3	15	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	c0003	978	1	0	1	0	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	c0004	978	1	1	0	0	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	c0005	978	1	0	1	0	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	c0006	978	1	0	0	0	0	1	copy fasta	MACROD1	chr11	63993558	64171113
MACROD2_chr20_13990516_16058197	0/0	c0001	1347	15	11	3	1	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	c0002	1347	8	5	2	1	0	0	copy fasta	MACROD2	chr20	13990516	16058197