JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MACROD2_chr20_13990516_16058197	0/0	c0003	1347	1	0	1	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROH2A1_chr5_135329381_135404231	0/0	c0001	1119	168	52	34	62	3	17	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	c0002	1119	32	26	5	1	0	0	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	c0003	1119	17	1	2	9	0	5	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	c0004	1119	1	1	0	0	0	0	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	c0005	1119	1	0	0	0	1	0	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	c0006	1119	1	0	1	0	0	0	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A2_chr10_70047846_70117282	1/1	c0001	1119	351	79	55	169	11	35	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0002	1119	7	5	2	0	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0003	1119	5	0	2	0	1	2	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0004	1119	3	3	0	0	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0005	1119	1	0	0	0	0	1	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0006	1119	1	0	0	1	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0007	1119	1	1	0	0	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0008	1119	1	0	1	0	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0009	1119	1	0	0	1	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	c0010	1119	1	0	0	1	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MAD1L1_chr7_1810795_2237945	1/0	c0001	2157	145	62	21	40	7	14	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/1	c0002	2157	50	2	11	28	3	5	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0003	2157	30	12	6	7	3	2	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0004	2157	13	0	8	1	0	4	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0005	2157	12	2	5	4	1	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0006	2157	3	3	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0007	2157	3	3	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0008	2157	1	0	0	1	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0009	2157	1	0	0	0	0	1	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0010	2157	1	1	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0011	2157	1	1	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0012	2157	1	0	0	1	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0013	2157	1	1	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0014	2157	1	1	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	c0015	2157	1	0	1	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD2L1BP_chr6_43630840_43645941	1/1	c0001	825	334	77	61	144	12	38	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0002	825	17	17	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0003	825	7	0	1	1	2	3	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0004	825	4	0	4	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0005	825	3	0	0	0	0	3	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0006	825	3	3	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0007	825	1	0	0	1	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	c0008	825	1	1	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1_chr4_120050623_120071848	1/1	c0001	618	374	88	59	169	16	40	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	c0002	618	6	1	3	1	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	c0003	618	2	1	0	0	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L2_chr1_11669480_11686148	1/1	c0001	636	419	92	74	188	14	49	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	c0002	636	6	6	0	0	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	c0003	621	1	1	0	0	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	c0004	636	1	0	0	0	0	1	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	c0005	636	1	1	0	0	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	c0006	636	1	0	0	1	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	c0007	636	1	0	0	1	0	0	copy fasta	MAD2L2	chr1	11669480	11686148