JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MADCAM1_chr19_491486_510343	0/0	c0001	1197	74	17	9	38	2	8	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0002	1221	45	1	12	17	4	11	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0003	1149	30	9	1	19	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0004	1221	28	1	12	12	1	2	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/1	c0005	1221	19	0	6	11	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	1/0	c0006	1149	17	1	9	0	4	2	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0007	1173	15	15	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0008	1173	12	0	0	11	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0009	1197	12	0	0	9	0	3	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0010	1197	11	0	8	0	1	2	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0011	1173	9	9	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0012	1197	9	0	2	7	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0013	1221	8	8	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0014	1221	8	5	0	3	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0015	1173	5	4	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0016	1197	4	4	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0017	1197	4	0	0	4	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0018	1197	4	0	3	0	1	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0019	1149	4	1	2	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0020	1221	3	0	0	0	0	3	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0021	1221	3	0	0	3	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0022	1197	3	3	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0023	1173	2	2	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0024	1197	2	1	1	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0025	1221	2	2	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0026	1221	2	1	1	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0027	1173	2	0	0	2	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0028	1173	2	0	2	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0029	1197	2	2	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0030	1173	1	0	1	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0031	1173	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0032	1221	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0033	1173	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0034	1149	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0035	1197	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0036	1197	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0037	1221	1	0	0	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0038	1197	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0039	1221	1	0	0	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0040	1221	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0041	1221	1	0	0	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0042	1197	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0043	1221	1	0	0	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0044	1173	1	0	0	0	1	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0045	1197	1	0	0	0	0	1	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0046	1197	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0047	1173	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0048	1149	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0049	1173	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0050	1221	1	0	0	1	0	0	copy fasta	MADCAM1	chr19	491486	510343