JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MADCAM1_chr19_491486_510343	0/0	c0051	1197	1	0	1	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	0/0	c0052	1221	1	1	0	0	0	0	copy fasta	MADCAM1	chr19	491486	510343
MADD_chr11_47265133_47335031	0/1	c0001	4953	124	37	19	57	2	8	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0002	4953	84	11	20	37	2	14	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0003	4953	36	6	11	5	5	9	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0004	4953	36	16	2	13	3	2	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0005	4953	27	1	7	8	2	9	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0006	4953	9	9	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	1/0	c0007	4953	5	4	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0008	4953	4	4	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0009	4953	3	1	2	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0010	4953	2	0	1	0	1	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0011	4953	1	1	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0012	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0013	4953	1	0	0	0	0	1	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0014	4953	1	0	1	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0015	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0016	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0017	4953	1	0	1	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0018	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0019	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0020	4953	1	0	0	0	1	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0021	4953	1	0	0	0	0	1	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0022	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0023	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	c0024	4953	1	0	0	1	0	0	copy fasta	MADD	chr11	47265133	47335031
MAEA_chr4_1284891_1345137	0/0	c0001	1191	206	45	47	84	9	21	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	1/1	c0002	1191	144	19	24	68	7	24	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0003	1191	21	21	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0004	1191	3	3	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0005	1191	2	1	1	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0006	1191	2	1	1	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0007	1191	1	1	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0008	1191	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0009	1191	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0010	1191	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0011	1191	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0012	1191	1	0	0	0	0	1	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0013	1191	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0014	1191	1	1	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0015	1191	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	c0016	1191	1	0	1	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEL_chr1_166984280_167027214	1/1	c0001	1305	256	32	53	127	13	29	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0002	1305	120	34	16	58	1	11	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0003	1305	21	21	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0004	1305	4	4	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0005	1305	3	0	3	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0006	1305	2	0	0	2	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0007	1305	1	0	0	1	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	c0008	1305	1	1	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214