JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD1_chr10_90907096_90926087	0/0	c0007	960	1	0	1	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	c0008	960	1	0	1	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD1_chr10_90907096_90926087	0/0	c0009	960	1	0	1	0	0	0	copy fasta	ANKRD1	chr10	90907096	90926087
ANKRD20A1_chr9_67853931_67907394	0/0	c0001	2472	5	4	0	1	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	1/0	c0002	2472	1	0	0	0	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	0/0	c0003	2472	1	1	0	0	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	0/0	c0004	2472	1	1	0	0	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD20A1_chr9_67853931_67907394	0/0	c0005	2472	1	0	0	1	0	0	copy fasta	ANKRD20A1	chr9	67853931	67907394
ANKRD22_chr10_88814896_88856844	1/1	c0001	576	233	47	44	109	12	19	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	c0002	576	142	18	24	77	4	19	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	c0003	576	28	20	6	2	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	c0004	576	14	12	2	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD22_chr10_88814896_88856844	0/0	c0005	576	1	1	0	0	0	0	copy fasta	ANKRD22	chr10	88814896	88856844
ANKRD23_chr2_96832912_96849021	1/1	c0001	918	333	92	66	124	14	35	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0002	918	15	0	0	15	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0003	918	2	0	1	1	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0004	918	1	1	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0005	918	1	0	0	0	0	1	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0006	918	1	0	1	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0007	918	1	1	0	0	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0008	918	1	0	0	1	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD23_chr2_96832912_96849021	0/0	c0009	918	1	0	0	1	0	0	copy fasta	ANKRD23	chr2	96832912	96849021
ANKRD24_chr19_4177689_4229814	0/0	c0001	3441	72	10	9	42	3	8	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0002	3441	68	0	19	37	5	7	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0003	3441	51	15	11	17	3	5	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0004	3441	25	1	5	19	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0005	3441	15	0	8	0	2	5	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0006	3441	13	13	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0007	3441	12	12	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0008	3441	7	7	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0009	3441	6	0	0	6	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0010	3441	6	3	2	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0011	3442	5	0	1	3	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0012	3441	5	5	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	1/0	c0013	3441	5	0	2	0	2	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0014	3441	4	0	1	0	1	2	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0015	3441	4	1	2	0	1	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0016	3441	3	3	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0017	3441	3	0	3	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0018	3441	3	0	0	1	0	2	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0019	3442	3	3	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0020	3441	3	1	0	0	0	2	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0021	3441	2	0	0	2	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0022	3442	2	0	0	0	1	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0023	3441	2	0	1	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0024	3441	2	2	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0025	3442	2	1	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0026	3441	2	2	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0027	3441	2	2	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0028	3441	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814