JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAF1_chr8_144099461_144112611	0/1	c0001	771	273	46	67	111	13	35	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	c0002	771	24	16	5	1	1	1	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	1/0	c0003	771	19	17	1	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	c0004	771	16	16	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	c0005	771	2	0	0	2	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	c0006	771	1	1	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	c0007	771	1	0	1	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAFA_chr8_143423064_143435732	0/1	c0001	1059	388	69	76	186	12	44	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0002	1059	16	1	0	11	4	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0003	1062	13	12	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0004	1056	9	4	5	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0005	1062	7	6	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	1/0	c0006	1062	3	2	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0007	1059	2	0	0	2	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0008	1059	2	2	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0009	1059	2	0	0	0	0	2	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0010	1059	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0011	1059	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0012	1059	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	c0013	1050	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFB_chr20_40680848_40694236	1/1	c0001	972	426	88	70	206	16	44	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	c0002	972	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	c0003	972	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFF_chr22_38196994_38221507	1/1	c0001	495	384	95	74	153	14	46	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	c0002	495	2	0	0	2	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	c0003	495	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	c0004	495	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFG_chr17_81913270_81932735	1/1	c0001	489	354	85	60	159	10	38	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	c0002	489	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	c0003	489	1	1	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFK_chr7_1525702_1548043	1/1	c0001	471	377	89	70	160	12	44	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	c0002	471	3	3	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAF_chr16_79588838_79605737	1/1	c0001	1212	441	91	73	211	16	48	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0002	1212	6	0	0	6	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0003	1212	5	0	5	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0004	1212	4	3	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0005	1212	2	2	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0006	1200	2	0	0	2	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0007	1212	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0008	1212	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0009	1212	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0010	1212	1	0	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0011	1212	1	0	0	0	0	1	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0012	1212	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0013	1212	1	0	0	0	0	1	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	c0014	1212	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAGEA10_chrX_152128310_152143577	0/1	c0001	1110	261	61	50	110	9	30	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	1/0	c0002	1110	12	10	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	c0003	1110	7	7	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	c0004	1110	1	0	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577