JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEA10_chrX_152128310_152143577	0/0	c0005	1110	1	0	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA11_chrX_149707060_149722268	1/1	c0001	1290	155	8	15	100	4	26	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	c0002	1290	144	58	36	42	6	2	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	c0003	1290	10	9	1	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	c0004	1290	2	2	0	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	c0005	1290	1	1	0	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA12_chrX_152728757_152742669	0/0	c0001	945	149	20	13	92	2	22	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	1/1	c0002	945	147	49	38	45	5	8	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	c0003	945	14	0	7	7	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	c0004	945	8	8	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	c0005	945	2	0	0	0	2	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	c0006	956	1	0	0	1	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	c0007	945	1	1	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA1_chrX_153174284_153188880	1/1	c0001	930	177	46	42	57	10	20	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	c0002	930	94	10	15	66	0	3	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	c0003	930	46	2	5	27	1	11	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	c0004	930	24	21	3	0	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	c0005	924	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	c0006	929	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA2B_chrX_152709628_152723607	0/0	c0001	945	230	53	39	108	5	25	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0002	945	12	0	4	7	1	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0003	945	6	6	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0004	945	5	5	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0005	945	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0006	945	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0007	945	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	c0008	944	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2_chrX_152744863_152758842	0/0	c0001	945	168	34	30	68	7	29	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	c0002	945	11	0	4	6	1	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	c0003	945	5	5	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	c0004	945	4	4	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	c0005	945	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	c0006	945	1	0	1	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	c0007	947	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA3_chrX_152693794_152707347	1/1	c0001	945	154	26	32	68	11	15	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0002	945	27	2	1	20	2	2	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0003	945	3	3	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0004	945	2	2	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0005	945	2	1	0	1	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0006	945	2	2	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0007	945	1	0	0	0	0	1	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	c0008	945	1	1	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA4_chrX_151907889_151930170	1/1	c0001	954	151	22	29	75	5	18	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0002	954	143	19	19	86	6	13	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0003	954	12	12	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0004	954	10	5	1	3	0	1	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0005	954	5	4	1	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0006	954	5	3	1	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0007	951	4	3	1	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0008	951	3	3	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170