JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEA4_chrX_151907889_151930170	0/0	c0009	954	2	0	2	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0010	951	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0011	954	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0012	954	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0013	955	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0014	955	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0015	954	1	0	1	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0016	954	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0017	954	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	c0018	951	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA6_chrX_152761136_152774689	1/1	c0001	945	134	31	27	52	7	15	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0002	945	24	9	6	8	1	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0003	945	3	3	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0004	945	3	3	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0005	945	2	1	0	0	0	1	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0006	945	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0007	946	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0008	945	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0009	944	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0010	945	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0011	944	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0012	945	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0013	945	1	0	0	0	0	1	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0014	945	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0015	946	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0016	955	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0017	945	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0018	956	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0019	946	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0020	946	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0021	948	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	c0022	942	1	0	0	0	1	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA8_chrX_149876183_149890825	1/1	c0001	957	214	48	43	92	6	23	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0002	957	42	1	5	21	5	10	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0003	957	14	13	1	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0004	957	10	10	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0005	957	2	2	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0006	957	1	0	1	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0007	957	1	0	0	1	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0008	957	1	1	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0009	957	1	0	0	0	0	1	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	c0010	957	1	0	0	1	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA9B_chrX_149576653_149592459	0/0	c0001	948	186	37	34	82	11	22	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0002	948	26	3	7	15	0	1	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0003	948	14	13	0	0	0	1	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0004	948	10	9	1	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0005	981	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0006	947	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0007	948	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0008	948	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459