JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEA9B_chrX_149576653_149592459	0/0	c0009	946	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	c0010	946	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9_chrX_149776930_149792737	0/0	c0001	948	225	39	49	103	11	23	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0002	948	31	23	3	1	0	4	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0003	948	7	0	0	7	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0004	948	2	0	0	0	0	2	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0005	948	2	2	0	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0006	942	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0007	948	1	0	0	0	0	1	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0008	949	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0009	949	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0010	947	1	0	1	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	c0011	948	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEB10_chrX_27802990_27828014	1/1	c0001	1044	163	26	30	78	9	18	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0002	1044	33	20	3	8	0	2	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0003	1044	31	9	15	2	2	3	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0004	1044	13	13	0	0	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0005	1044	4	0	3	0	0	1	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0006	1044	2	0	0	0	0	2	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0007	1044	2	0	0	2	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0008	1044	1	0	0	1	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	c0009	1043	1	0	0	1	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB16_chrX_35793342_35808772	0/1	c0001	975	185	42	24	91	8	19	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	1/0	c0002	975	98	32	20	30	3	12	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	c0003	974	2	0	0	2	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	c0004	975	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	c0005	975	1	0	0	0	0	1	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	c0006	974	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB17_chrX_16162481_16176464	1/1	c0001	1011	272	70	61	104	9	26	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	c0002	1011	4	0	0	4	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	c0003	1011	2	0	0	0	0	2	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	c0004	1012	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	c0005	1012	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	c0006	1011	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB17_chrX_16162481_16176464	0/0	c0007	1009	1	0	0	1	0	0	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB18_chrX_26133343_26145736	0/1	c0001	1032	253	55	40	128	6	23	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	1/0	c0002	1032	65	16	20	18	5	5	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0003	1032	2	2	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0004	1032	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0005	1031	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0006	1032	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0007	1032	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0008	1032	1	0	1	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	c0009	1032	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB1_chrX_30242146_30257040	1/1	c0001	1044	328	67	56	162	13	28	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	c0002	1044	4	4	0	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	c0003	1044	2	2	0	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	c0004	1044	1	1	0	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	c0005	1044	1	0	1	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	c0006	985	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040