JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEB1_chrX_30242146_30257040	0/0	c0007	1044	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB2_chrX_30210563_30225089	0/0	c0001	960	172	30	25	91	5	21	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	1/0	c0002	960	50	1	7	37	0	4	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/1	c0003	960	45	19	15	5	3	2	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0004	960	39	22	11	2	3	1	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0005	960	5	4	1	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0006	960	3	0	0	3	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0007	960	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0008	960	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0009	960	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0010	961	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0011	960	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	c0012	961	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB3_chrX_30225657_30242495	0/0	c0001	1041	147	20	27	75	7	18	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	1/0	c0002	1041	92	11	5	70	0	5	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/1	c0003	1041	91	44	28	9	6	3	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0004	1040	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0005	1041	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0006	1041	1	1	0	0	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0007	1041	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0008	1040	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0009	1040	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0010	1039	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	c0011	1041	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB4_chrX_30237000_30249187	0/1	c0001	1041	224	53	52	81	13	24	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	1/0	c0002	1041	93	11	4	70	0	7	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0003	1041	8	6	2	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0004	1041	6	0	0	6	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0005	1041	5	5	0	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0006	1041	2	0	0	2	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0007	1041	2	2	0	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0008	1039	1	0	0	1	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0009	1040	1	1	0	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0010	1041	1	0	1	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0011	1040	1	0	0	1	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	c0012	1041	1	0	0	0	0	1	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB5_chrX_26211169_26223270	1/1	c0001	828	332	78	60	151	11	30	copy fasta	MAGEB5	chrX	26211169	26223270
MAGEB6B_chrX_26155601_26167410	0/1	c0001	1224	252	49	35	135	7	25	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	1/0	c0002	1224	68	17	20	17	6	7	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0003	1224	5	5	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0004	1224	5	4	1	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0005	1224	3	1	2	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0006	1224	2	0	0	2	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0007	1224	2	2	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0008	1224	1	1	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0009	1225	1	0	0	1	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6B_chrX_26155601_26167410	0/0	c0010	1224	1	1	0	0	0	0	copy fasta	MAGEB6B	chrX	26155601	26167410
MAGEB6_chrX_26187440_26200646	1/1	c0001	1224	247	48	45	123	9	20	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0002	1098	34	3	5	17	1	8	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0003	1224	11	9	2	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646