JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEB6_chrX_26187440_26200646	0/0	c0004	1224	10	9	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0005	1224	5	4	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0006	1224	3	0	0	0	1	2	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0007	1224	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0008	1224	1	0	0	0	0	1	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0009	1224	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0010	1224	1	0	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0011	1224	1	0	1	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0012	1224	1	0	0	0	0	1	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0013	1098	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0014	1224	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0015	1224	1	1	0	0	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEB6_chrX_26187440_26200646	0/0	c0016	1223	1	0	0	1	0	0	copy fasta	MAGEB6	chrX	26187440	26200646
MAGEC1_chrX_141898894_141914374	0/0	c0001	3639	21	0	7	10	0	4	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0002	3429	14	0	4	10	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0003	3534	13	0	3	8	1	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0004	3534	10	0	1	9	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0005	3429	8	1	3	0	3	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0006	3639	7	0	1	6	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0007	3534	7	0	0	7	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0008	3639	5	0	0	5	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0009	3534	5	0	0	3	0	2	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0010	3639	4	0	0	4	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	1/0	c0011	3429	4	0	0	2	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0012	3429	4	1	1	1	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0013	3324	4	0	0	3	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0014	3744	4	0	0	4	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0015	3639	4	0	3	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0016	3639	4	4	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0017	3639	4	0	0	3	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0018	3429	4	0	2	0	2	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0019	3534	4	0	4	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0020	3744	4	0	0	4	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0021	3639	4	2	2	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0022	3639	3	3	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0023	3534	3	3	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0024	3534	3	0	1	1	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0025	3639	3	2	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0026	3534	3	0	0	3	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0027	3429	3	0	0	2	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0028	3429	3	0	3	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0029	3429	3	2	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0030	4164	3	3	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0031	3534	2	2	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0032	3429	2	0	0	2	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0033	3429	2	1	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0034	3324	2	0	0	2	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0035	3429	2	2	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0036	3429	2	0	0	0	0	2	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0037	3429	2	0	1	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374