JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEC1_chrX_141898894_141914374	0/0	c0088	3429	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0089	3433	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0090	3324	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0091	3429	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0092	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0093	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0094	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0095	3744	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0096	3429	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0097	3639	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0098	3324	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0099	3219	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0100	3429	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0101	3534	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0102	3639	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0103	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0104	3849	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0105	3429	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0106	3429	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0107	3429	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0108	3429	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0109	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0110	3639	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0111	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0112	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0113	3429	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0114	3534	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0115	3744	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0116	3954	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0117	3639	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0118	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0119	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0120	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0121	3744	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0122	3639	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0123	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0124	3534	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0125	3429	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0126	3429	1	0	0	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0127	3429	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0128	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0129	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0130	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0131	3742	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0132	3639	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0133	3744	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0134	3534	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0135	3429	1	0	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0136	3534	1	0	0	0	0	1	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0137	3639	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374