JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEC1_chrX_141898894_141914374	0/0	c0188	3534	1	0	0	1	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0189	3534	1	0	1	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0190	3534	1	0	0	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0191	3849	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0192	4374	1	1	0	0	0	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC1_chrX_141898894_141914374	0/0	c0193	3429	1	0	0	0	1	0	copy fasta	MAGEC1	chrX	141898894	141914374
MAGEC2_chrX_142197342_142210290	0/0	c0001	1122	259	54	51	124	9	21	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	1/1	c0002	1122	66	27	11	10	4	12	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	c0003	1123	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	c0004	1122	1	1	0	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	c0005	1125	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	c0006	1123	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	c0007	1122	1	0	1	0	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC2_chrX_142197342_142210290	0/0	c0008	1122	1	0	0	1	0	0	copy fasta	MAGEC2	chrX	142197342	142210290
MAGEC3_chrX_141833316_141902832	0/0	c0001	1932	67	1	11	50	0	5	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0002	1932	67	4	15	28	7	13	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	1/0	c0003	1932	21	3	1	14	0	2	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/1	c0004	1932	19	3	7	4	2	2	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0005	1932	16	3	3	6	0	4	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0006	1915	11	8	2	0	0	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0007	1932	10	0	2	6	1	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0008	1932	9	6	3	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0009	1932	6	6	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0010	1932	5	3	1	0	0	1	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0011	1932	5	5	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0012	1932	5	1	0	3	1	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0013	1932	4	4	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0014	1932	4	3	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0015	1932	3	3	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0016	1932	3	0	0	3	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0017	1915	3	3	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0018	1932	3	0	1	2	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0019	1932	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0020	1932	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0021	1932	2	1	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0022	1932	2	0	2	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0023	1932	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0024	1932	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0025	1932	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0026	1915	2	2	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0027	1915	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0028	1915	1	0	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0029	1933	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0030	1926	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0031	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0032	1932	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0033	1933	1	0	0	1	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0034	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0035	1932	1	0	1	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832
MAGEC3_chrX_141833316_141902832	0/0	c0036	1932	1	1	0	0	0	0	copy fasta	MAGEC3	chrX	141833316	141902832