JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD24_chr19_4177689_4229814	0/0	c0029	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0030	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0031	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0032	3423	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0033	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0034	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0035	3441	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0036	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0037	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0038	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0039	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0040	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0041	3442	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0042	3442	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0043	3441	1	0	0	0	0	1	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0044	3441	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0045	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0046	3442	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0047	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0048	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0049	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0050	3442	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0051	3442	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/1	c0052	3441	1	0	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0053	3442	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0054	3441	1	1	0	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0055	3441	1	0	1	0	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD24_chr19_4177689_4229814	0/0	c0056	3441	1	0	0	1	0	0	copy fasta	ANKRD24	chr19	4177689	4229814
ANKRD26_chr10_26999116_27105494	0/1	c0001	5133	153	35	43	53	3	18	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0002	5133	64	9	9	40	1	5	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0003	5130	41	0	0	38	0	3	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0004	5133	26	0	0	26	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0005	5133	12	10	1	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	1/0	c0006	5133	10	2	2	0	2	3	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0007	5133	7	6	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0008	5133	6	4	2	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0009	5133	4	0	1	0	0	3	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0010	5133	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0011	5133	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0012	5133	2	0	1	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0013	5133	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0014	5133	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0015	5133	2	0	0	0	2	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0016	5133	2	2	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0017	5133	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0018	5133	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0019	5133	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0020	5133	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0021	5133	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0022	5133	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494