JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGED4_chrX_52179888_52197268	0/0	c0008	2226	1	1	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0009	2227	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0010	2226	1	0	1	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0011	2226	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0012	2226	1	0	0	0	0	1	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0013	2225	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0014	2227	1	0	1	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0015	2227	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0016	2226	1	1	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0017	2226	1	1	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	c0018	2234	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGEE1_chrX_76422710_76436342	1/1	c0001	2874	217	31	40	106	9	29	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0002	2874	42	29	7	5	1	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0003	2874	12	11	1	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0004	2874	3	0	1	0	1	1	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0005	2874	2	1	1	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0006	2874	2	2	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0007	2874	1	0	0	0	0	1	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0008	2873	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0009	2874	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0010	2874	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0011	2874	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0012	2875	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0013	2874	1	0	1	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0014	2875	1	0	0	0	0	1	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0015	2874	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0016	2874	1	1	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0017	2874	1	1	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0018	2874	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0019	2874	1	0	1	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	c0020	2877	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE2_chrX_75777987_75790254	1/1	c0001	1572	149	74	36	5	10	22	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0002	1572	115	1	16	87	1	10	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0003	1572	4	0	0	4	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0004	1572	2	0	2	0	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0005	1575	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0006	1572	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0007	1572	1	1	0	0	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0008	1572	1	1	0	0	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0009	1572	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0010	1572	1	1	0	0	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	c0011	1572	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEF1_chr3_184705364_184717064	1/0	c0001	924	220	37	33	130	1	18	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/1	c0002	927	185	28	43	72	12	29	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0003	927	15	15	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0004	930	7	4	3	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0005	924	7	1	1	4	1	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0006	924	6	0	0	6	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0007	924	5	5	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0008	927	3	3	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064