JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEF1_chr3_184705364_184717064	0/0	c0009	927	2	2	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0010	927	2	2	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0011	924	1	0	0	1	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0012	924	1	0	0	0	0	1	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0013	927	1	0	0	1	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	c0014	927	1	1	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEH1_chrX_55447127_55458566	1/1	c0001	660	221	68	38	82	7	24	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	c0002	660	79	5	22	41	4	7	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	c0003	660	3	0	0	3	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	c0004	658	1	0	0	1	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEL2_chr15_23638549_23652867	1/1	c0001	3750	325	47	72	156	15	33	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0002	3750	21	4	2	13	2	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0003	3751	11	1	1	8	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0004	3750	9	9	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0005	3750	7	7	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0006	3750	5	5	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0007	3750	5	1	0	2	1	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0008	3750	4	0	0	4	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0009	3750	3	0	0	3	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0010	3750	3	3	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0011	3750	3	3	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0012	3750	2	2	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0013	3750	2	2	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0014	3750	2	1	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0015	3750	2	0	0	2	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0016	3750	2	2	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0017	3750	2	0	0	0	0	2	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0018	3750	2	1	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0019	3750	2	0	0	2	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0020	3729	2	0	0	0	0	2	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0021	3750	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0022	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0023	3750	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0024	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0025	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0026	3729	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0027	3750	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0028	3751	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0029	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0030	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0031	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0032	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0033	3750	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0034	3750	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0035	3729	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0036	3751	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0037	3750	1	0	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0038	3750	1	0	0	1	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0039	3750	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0040	3750	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867