JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGEL2_chr15_23638549_23652867	0/0	c0041	3750	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	c0042	3750	1	0	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGI1_chr3_65348526_66043918	0/0	c0001	4389	60	29	17	3	4	7	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0002	4392	21	6	6	3	2	4	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0003	4389	7	7	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0004	4395	5	5	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0005	4389	4	4	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0006	4389	3	3	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0007	4389	1	0	0	0	0	1	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0008	4392	1	0	1	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0009	4389	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	c0010	4377	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI2_chr7_78012055_79458667	0/0	c0001	4368	10	6	2	0	2	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0002	4368	8	8	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0003	4368	6	4	2	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0004	4368	5	5	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0005	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0006	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0007	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0008	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0009	4368	1	0	1	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0010	4368	1	0	1	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0011	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0012	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0013	4368	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0014	4368	1	0	1	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	c0015	4368	1	0	1	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI3_chr1_113385515_113690923	1/0	c0001	4446	188	20	37	108	6	16	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/1	c0002	4446	38	0	12	15	4	6	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0003	4446	3	3	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0004	4446	2	1	1	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0005	4446	1	0	0	1	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0006	4446	1	0	0	0	1	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0007	4446	1	0	0	0	1	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0008	4446	1	1	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	c0009	4446	1	1	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGIX_chrX_49157758_49173774	1/1	c0001	1005	204	53	49	68	10	22	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0002	1005	14	0	1	8	0	5	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0003	1005	12	10	2	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0004	1005	8	6	2	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0005	1005	7	1	1	5	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0006	1005	4	4	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0007	1005	3	0	0	0	0	3	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0008	1006	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0009	1006	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0010	1005	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0011	1005	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0012	1004	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0013	1005	1	0	0	0	1	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	c0014	1006	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774