JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAGIX_chrX_49157758_49173774	0/0	c0015	1005	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGOHB_chr12_10599193_10618609	0/1	c0001	447	288	39	57	147	13	31	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	1/0	c0002	447	91	56	21	1	3	9	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	c0003	447	1	1	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOH_chr1_53221900_53243518	1/1	c0001	441	438	98	72	216	12	38	copy fasta	MAGOH	chr1	53221900	53243518
MAGT1_chrX_77820747_77900435	1/1	c0001	1008	256	60	40	116	10	28	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	c0002	1008	2	2	0	0	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	c0003	1009	1	0	0	0	1	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	c0004	1007	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAG_chr19_35287161_35318807	0/0	c0001	1881	150	61	19	51	4	15	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0002	1881	87	1	15	65	1	5	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	1/0	c0003	1881	81	9	14	41	7	9	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0004	1881	36	3	8	19	2	4	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/1	c0005	1881	26	7	10	0	4	4	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0006	1881	12	0	6	4	0	2	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0007	1881	8	0	0	8	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0008	1881	5	5	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0009	1881	4	4	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0010	1881	3	0	0	2	0	1	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0011	1881	2	0	0	2	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0012	1881	2	1	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0013	1881	2	0	0	2	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0014	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0015	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0016	1881	1	0	0	0	0	1	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0017	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0018	1881	1	0	1	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0019	1881	1	1	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0020	1881	1	0	1	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0021	1881	1	1	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0022	1881	1	0	0	0	0	1	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0023	1881	1	1	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0024	1881	1	1	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0025	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0026	1881	1	1	0	0	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0027	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0028	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	c0029	1881	1	0	0	1	0	0	copy fasta	MAG	chr19	35287161	35318807
MAIP1_chr2_199950582_199969117	1/1	c0001	876	420	88	65	209	16	40	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	c0002	876	2	0	2	0	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	c0003	876	1	0	1	0	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	c0004	876	1	0	0	1	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAJIN_chr11_64933230_64977108	1/1	c0001	651	373	86	58	178	16	33	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	c0002	651	9	7	2	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	c0003	651	1	1	0	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	c0004	651	1	0	0	0	0	1	copy fasta	MAJIN	chr11	64933230	64977108
MAK16_chr8_33480182_33506262	0/1	c0001	903	213	50	38	99	9	16	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	1/0	c0002	903	169	29	28	86	1	24	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	c0003	906	15	11	2	0	2	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	c0004	903	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262