JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAK16_chr8_33480182_33506262	0/0	c0005	903	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	c0006	903	1	0	0	1	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK_chr6_10757723_10843539	0/1	c0001	1947	212	79	42	69	4	17	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	1/0	c0002	1947	41	7	15	9	3	6	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0003	1947	8	0	8	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0004	1947	2	1	1	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0005	1947	2	1	0	0	0	1	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0006	1947	1	0	0	0	0	1	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0007	1947	1	0	0	0	0	1	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0008	1947	1	0	0	1	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0009	1947	1	1	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0010	1947	1	0	0	1	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0011	1947	1	0	0	0	1	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	c0012	1947	1	1	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAL2_chr8_119203363_119250673	1/1	c0001	531	327	60	60	155	15	35	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	c0002	531	48	29	2	13	0	4	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	c0003	531	6	1	4	0	1	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	c0004	531	1	0	0	0	0	1	copy fasta	MAL2	chr8	119203363	119250673
MALL_chr2_110078870_110120822	1/0	c0001	462	290	81	48	115	14	31	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	c0002	462	42	6	16	19	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	c0003	462	2	2	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	c0004	462	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALRD1_chr10_19043801_19739478	0/0	c0001	6471	5	0	1	2	0	2	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0002	6471	5	1	4	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0003	6471	3	1	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0004	6471	3	0	0	0	1	2	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0005	6471	3	0	0	3	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0006	6471	3	0	1	0	0	2	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0007	6471	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0008	6471	2	0	2	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0009	6471	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0010	6471	2	1	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0011	6471	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0012	6471	2	0	0	1	1	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0013	6471	2	1	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0014	6471	2	0	0	2	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0015	6471	2	0	0	1	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0016	6471	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0017	6471	2	2	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0018	6471	2	0	1	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0019	6471	2	0	2	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0020	6471	2	1	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0021	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0022	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/1	c0023	6471	1	0	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0024	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0025	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0026	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0027	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0028	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478