JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MALRD1_chr10_19043801_19739478	0/0	c0029	6471	1	0	0	0	1	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0030	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0031	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0032	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0033	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0034	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0035	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0036	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0037	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0038	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0039	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0040	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0041	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0042	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0043	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0044	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0045	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0046	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0047	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0048	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0049	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0050	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0051	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0052	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0053	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0054	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0055	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0056	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0057	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0058	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0059	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0060	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0061	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0062	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0063	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0064	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0065	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0066	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0067	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0068	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0069	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0070	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0071	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0072	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0073	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0074	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0075	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0076	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0077	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0078	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478