JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MALRD1_chr10_19043801_19739478	1/0	c0079	6471	1	0	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0080	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0081	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0082	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0083	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0084	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0085	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0086	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0087	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0088	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0089	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0090	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0091	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0092	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0093	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0094	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0095	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0096	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0097	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0098	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0099	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0100	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0101	6471	1	0	0	0	1	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0102	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0103	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0104	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0105	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0106	6471	1	0	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0107	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0108	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0109	6471	1	0	1	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0110	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0111	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0112	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0113	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0114	6067	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0115	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0116	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0117	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0118	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0119	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0120	6471	1	0	0	1	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0121	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	c0122	6471	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALSU1_chr7_23294339_23316729	1/1	c0001	705	400	83	66	194	16	39	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	c0002	705	24	6	8	4	0	6	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	c0003	705	5	5	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	c0004	705	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	c0005	705	1	0	0	0	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	c0006	705	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729