JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MALSU1_chr7_23294339_23316729	0/0	c0007	705	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	c0008	705	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALT1_chr18_58666465_58759477	1/1	c0001	2475	384	82	69	178	14	39	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0002	2475	9	0	0	9	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0003	2475	6	0	1	0	0	5	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0004	2475	2	2	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0005	2475	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0006	2475	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0007	2475	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0008	2475	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	c0009	2442	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MAL_chr2_95020708_95058992	1/1	c0001	462	324	70	64	146	8	34	copy fasta	MAL	chr2	95020708	95058992
MAMDC2_chr9_70038848_70231972	0/1	c0001	2061	221	44	50	96	8	22	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0002	2058	46	0	4	36	1	5	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0003	2061	18	14	2	0	0	2	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	1/0	c0004	2061	14	7	5	0	1	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0005	2061	6	5	1	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0006	2061	5	0	0	5	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0007	2061	5	5	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0008	2058	2	0	0	2	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0009	2061	2	2	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0010	2061	2	0	2	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0011	2061	2	2	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0012	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0013	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0014	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0015	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0016	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0017	2061	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0018	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0019	2058	1	0	0	0	0	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0020	2058	1	0	0	0	0	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0021	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0022	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0023	2061	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0024	2058	1	0	0	0	0	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0025	2058	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0026	2058	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0027	2061	1	0	0	1	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	c0028	2061	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC4_chr9_136847346_136865799	0/1	c0001	3414	203	60	32	82	3	25	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	1/0	c0002	3414	64	4	30	16	5	8	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0003	3414	12	0	2	10	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0004	3414	10	0	3	0	1	6	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0005	3414	7	0	0	7	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0006	3414	6	0	4	0	2	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0007	3414	4	0	0	4	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0008	3414	3	0	3	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0009	3414	3	0	0	3	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0010	3414	2	2	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799