JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAMDC4_chr9_136847346_136865799	0/0	c0011	3414	2	0	1	0	1	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0012	3414	2	2	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0013	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0014	3414	1	0	0	0	0	1	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0015	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0016	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0017	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0018	3414	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0019	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0020	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0021	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0022	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0023	3414	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0024	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0025	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0026	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0027	3406	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0028	3414	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0029	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0030	3414	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0031	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0032	3414	1	0	0	0	0	1	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0033	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0034	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0035	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0036	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0037	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0038	3399	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0039	3414	1	0	1	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0040	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0041	3414	1	0	0	0	0	1	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0042	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0043	3414	1	1	0	0	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	c0044	3414	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAML1_chr5_179727822_179782283	1/1	c0001	3051	240	52	48	114	3	21	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0002	3051	62	3	15	32	8	4	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0003	3051	18	14	2	1	1	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0004	3051	6	6	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0005	3051	3	1	2	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0006	3051	3	1	1	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0007	3051	3	0	0	3	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0008	3051	3	3	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0009	3051	2	0	1	0	1	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0010	3051	2	0	0	2	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0011	3051	2	0	2	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0012	3051	2	0	0	0	0	2	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0013	3051	2	2	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0014	3051	1	0	1	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0015	3051	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0016	3051	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283