JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKRD26_chr10_26999116_27105494	0/0	c0023	5133	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0024	5133	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0025	5133	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0026	5133	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0027	5133	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0028	5133	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0029	5133	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0030	5133	1	0	1	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0031	5133	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0032	5130	1	0	0	1	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0033	5130	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0034	5133	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0035	5133	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0036	5133	1	0	0	0	0	1	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD26_chr10_26999116_27105494	0/0	c0037	5133	1	1	0	0	0	0	copy fasta	ANKRD26	chr10	26999116	27105494
ANKRD27_chr19_32592006_32680180	1/0	c0001	3153	85	5	18	44	7	10	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/1	c0002	3153	52	9	14	9	5	14	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0003	3153	45	8	3	28	1	5	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0004	3153	35	4	3	28	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0005	3153	22	6	2	11	1	2	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0006	3153	20	9	5	3	0	3	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0007	3153	14	0	0	13	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0008	3153	9	8	1	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0009	3153	8	8	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0010	3153	8	8	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0011	3153	6	3	0	3	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0012	3153	5	0	0	3	0	2	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0013	3153	4	4	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0014	3153	4	0	0	4	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0015	3153	2	2	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0016	3153	2	2	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0017	3153	2	2	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0018	3153	2	2	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0019	3153	2	0	1	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0020	3153	2	2	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0021	3153	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0022	3153	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0023	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0024	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0025	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0026	3153	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0027	3153	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0028	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0029	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0030	3153	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0031	3153	1	0	0	0	0	1	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0032	3153	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0033	3153	1	0	0	1	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0034	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180
ANKRD27_chr19_32592006_32680180	0/0	c0035	3153	1	1	0	0	0	0	copy fasta	ANKRD27	chr19	32592006	32680180