JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAML1_chr5_179727822_179782283	0/0	c0017	3051	1	0	0	0	1	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0018	3051	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0019	3051	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0020	3051	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0021	3051	1	0	0	0	0	1	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0022	3051	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0023	3051	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0024	3030	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	c0025	3030	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML2_chr11_95971598_96348195	0/0	c0001	3462	75	26	17	21	1	10	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/1	c0002	3462	70	10	11	30	5	13	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	1/0	c0003	3471	19	15	0	0	0	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0004	3462	11	0	5	3	0	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0005	3465	6	6	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0006	3462	6	1	4	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0007	3456	5	5	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0008	3465	5	0	2	0	0	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0009	3456	4	2	2	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0010	3471	3	0	2	0	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0011	3462	3	3	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0012	3462	2	2	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0013	3462	2	2	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0014	3471	2	0	1	0	1	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0015	3471	2	0	2	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0016	3462	2	2	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0017	3462	1	0	0	0	1	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0018	3462	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0019	3462	1	0	0	0	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0020	3462	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0021	3462	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0022	3462	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0023	3465	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0024	3462	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0025	3462	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0026	3462	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0027	3471	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0028	3462	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	c0029	3462	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML3_chr4_139711753_140159184	0/0	c0001	3402	29	4	6	8	3	8	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/1	c0002	3402	21	14	2	0	2	2	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0003	3411	20	14	0	6	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0004	3402	19	1	10	4	1	3	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0005	3408	13	6	4	1	0	2	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0006	3402	7	1	1	1	1	3	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0007	3405	6	5	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0008	3414	6	2	2	0	1	1	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0009	3393	4	3	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0010	3402	4	3	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0011	3402	3	1	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0012	3402	2	1	0	0	0	1	copy fasta	MAML3	chr4	139711753	140159184