JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAML3_chr4_139711753_140159184	0/0	c0013	3414	2	0	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0014	3405	2	2	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0015	3402	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0016	3381	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0017	3411	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0018	3411	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	1/0	c0019	3417	1	0	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0020	3402	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0021	3402	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0022	3402	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0023	3402	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0024	3402	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0025	3402	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0026	3405	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0027	3402	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	c0028	3399	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAMLD1_chrX_150358317_150519173	1/1	c0001	2325	182	45	29	76	7	23	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0002	2325	16	16	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0003	2325	9	0	1	8	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0004	2325	9	0	7	0	2	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0005	2325	2	2	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0006	2325	2	1	1	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0007	2325	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0008	2322	1	0	0	1	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0009	2325	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0010	2325	1	0	1	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0011	2325	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	c0012	2325	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMSTR_chr19_48707725_48724725	0/0	c0001	1248	232	55	32	121	7	17	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	1/1	c0002	1248	82	19	11	31	1	18	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	c0003	1248	62	16	21	8	6	11	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	c0004	1248	5	4	1	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	c0005	1248	3	3	0	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	c0006	1248	1	0	1	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	c0007	1248	1	1	0	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAN1A1_chr6_119172205_119354761	0/1	c0001	1962	224	33	40	112	12	26	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	1/0	c0002	1962	86	52	12	14	1	6	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0003	1962	19	1	6	9	0	3	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0004	1962	6	0	0	6	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0005	1962	5	0	2	0	1	2	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0006	1962	2	0	0	2	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0007	1962	2	2	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0008	1962	1	1	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0009	1962	1	0	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0010	1962	1	1	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0011	1962	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0012	1962	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	c0013	1962	1	0	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A2_chr1_117362449_117533872	1/1	c0001	1926	358	81	56	169	12	38	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0002	1926	4	4	0	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872