JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAN1A2_chr1_117362449_117533872	0/0	c0003	1926	2	0	0	2	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0004	1926	1	1	0	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0005	1926	1	1	0	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0006	1926	1	0	1	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0007	1926	1	1	0	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0008	1926	1	0	0	1	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	c0009	1926	1	0	1	0	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1B1_chr9_137081985_137114183	0/0	c0001	2100	247	47	43	108	14	35	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0002	2100	79	1	17	52	3	6	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0003	2100	30	28	1	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0004	2100	9	0	8	0	0	1	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0005	2100	6	0	5	0	0	1	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0006	2100	4	4	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0007	2100	3	2	1	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0008	2100	2	2	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0009	2100	2	2	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0010	2100	2	0	0	2	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0011	2100	2	0	0	2	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0012	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0013	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0014	2100	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0015	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0016	2100	1	0	0	0	1	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0017	2100	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0018	2100	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0019	2100	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0020	2100	1	0	0	1	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0021	2100	1	0	1	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0022	2100	1	0	1	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0023	2100	1	0	1	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0024	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0025	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0026	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0027	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0028	2100	1	1	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	c0029	2100	1	0	0	0	0	1	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1C1_chr1_25611791_25789450	1/1	c0001	1893	143	28	31	63	4	15	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0002	1893	79	30	15	31	0	3	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0003	1893	14	10	4	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0004	1893	7	7	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0005	1893	3	2	1	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0006	1893	1	0	1	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0007	1893	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0008	1893	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	c0009	1893	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN2A1_chr5_109684927_109874625	0/1	c0001	3435	78	27	22	22	4	2	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0002	3432	78	4	14	44	2	14	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	1/0	c0003	3435	60	2	22	18	5	12	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0004	3435	27	15	8	0	1	3	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0005	3435	15	2	4	6	2	1	copy fasta	MAN2A1	chr5	109684927	109874625