JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
MAN2A1_chr5_109684927_109874625	0/0	c0006	3435	10	10	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0007	3435	8	0	0	8	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0008	3435	3	3	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0009	3435	3	1	0	2	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0010	3435	2	0	0	2	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0011	3435	2	2	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0012	3435	2	2	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0013	3435	1	0	0	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0014	3432	1	0	1	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0015	3435	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0016	3435	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0017	3432	1	0	1	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0018	3435	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0019	3432	1	0	0	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	c0020	3435	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A2_chr15_90898302_90927579	0/0	c0001	3453	138	29	21	78	1	9	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0002	3453	99	0	13	74	0	12	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	1/1	c0003	3453	62	12	20	0	12	16	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0004	3453	18	1	8	9	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0005	3453	10	9	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0006	3453	9	2	1	0	0	6	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0007	3453	9	2	2	5	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0008	3453	8	0	3	0	2	3	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0009	3453	8	7	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0010	3453	7	7	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0011	3453	6	0	0	6	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0012	3453	5	4	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0013	3453	5	5	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0014	3453	2	0	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0015	3453	2	0	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0016	3453	2	0	0	1	1	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0017	3453	2	0	0	2	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0018	3453	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0019	3453	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0020	3453	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0021	3453	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0022	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0023	3453	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0024	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0025	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0026	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0027	3453	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0028	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0029	3453	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0030	3453	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0031	3453	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0032	3453	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0033	3453	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0034	3453	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	c0035	3453	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579